Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015937658.1_cds_XP_016482874.1_74051
CDS Infomation

[gene=LOC107803625] [db_xref=GeneID:107803625] [protein=low-temperature-induced cysteine proteinase-like] [protein_id=XP_016482874.1] [location=join(43270..43768,44792..45027,45110..45250,45427..45873,46019..46117)] [gbkey=CDS]
Sequence

ATGGCGATTCATACTTCCACTCTCTCCATCTCCATACTTGTAATGCTCATGTTCTCCGTC
GTATCATCATCGGCGGCGGAGGACATGTCCATTATAAGCTACAACGAAAAACATCACACG
AACGGCGAGTCAACGGTCTGGCGAACAGACGATGAAGTCATGTCTTTATATGAATCTTGG
CTAGTTGAACATAAGAAAGTGTACAACGCCTTAGGAGAAAAGGACAAACGGTTTCAGATC
TTTAAAGATAACCTTAGATACATCGATGAACATAACTCTGTGCCCGATAAAAGTTACAAG
CTGGGTTTGACCCAGTTTGCAGATTTGACCAACGAGGAGTACAAGTCCATCTACTTGGGT
ACTAAGCCCGATGGTCGTAGCAGGTTGTTAAATACCCAAAGTGACCGTTATGCCCCTAAG
GTCGGAGATAGTTTGCCGGATTCCGTTGACTGGAGGAAGAAAGGTGTTCTTGTTGACGTC
AAAAATCAAGGGCAATGTGGGAGTTGTTGGGCTTTCTCAGCAGTTGCTTCAATTGAAGCA
GTAAACAAGATAGTGACAGGTAATCTGATCTCGTTATCTGAACAAGAGCTGGTAGATTGT
GATACGTCCGATAACCAAGGCTGTCAAGGGGGTCTAATGGACGATGCCTTTAAATTCGTC
ATTCAAAATGGAGGAATAGACACTGAGGAAGATTATCCTTACAAAGCCAAAGATGGAAAA
TGCGACCAAGCAAGGAAAAATGCCAGGGTTGTCACCATCGACGGGTATGAAGATGTTCCT
GATAATGATGAAAAGGCACTGAAAAAGGCCGTTGCTGGTCAACCCGTCAGCGTTGCTATC
GAAGCTGGTGGCAAAGACTTCCAGCACTATAAATCGGGTATCTTTACCGGAAAATGTGGT
GCAGCAGTGGACCATGGTGTGGTTGCAGTAGGGTATGGTAGTGAAAATGGCATGGATTAT
TGGATTGTGAGGAACTCGTGGGGTGCTTCGTGGGGTGAAAAGGGCTACCTCAGGATGCAG
CGAAACATTGGCAACCCCAAGGGTTTGTGTGGTATTGCTACGATTGCTTCTTACCCTGTA
AAGACAGGCCAAAACCCTCCAAAACCAGCTCCATCTCCTCCACCAGTCAAGCCGCCCACT
CAATGTGATGATTATAACGAATGCCCAGCTGGAACGACGTGCTGCTGTGTCTACGAGTAC
TATAAATACTGCTTTGCTTGGGGTTGTTGTCCCATGGAAGGAGCTACTTGCTGTAAAGAC
CATAACAGTTGCTGCCCACATGATTATCCTGTCTGCAATGTTAAAGCAGGCACCTGCTCA
ATTAGCAAGAACAACCCACTAGGAGTCAAAGCAATGCAGCACATTCTGGCCAAACCTATT
GGTACCTTCGGAAATGAGGGAAAGAAGAGCCCTTCTTCTTGA

Peptide Sequence

PEP ID

XP_016482874.1
PEP Infomation

PREDICTED: low-temperature-induced cysteine proteinase-like [Nicotiana tabacum]
Sequence

MAIHTSTLSISILVMLMFSVVSSSAAEDMSIISYNEKHHTNGESTVWRTDDEVMSLYESW
LVEHKKVYNALGEKDKRFQIFKDNLRYIDEHNSVPDKSYKLGLTQFADLTNEEYKSIYLG
TKPDGRSRLLNTQSDRYAPKVGDSLPDSVDWRKKGVLVDVKNQGQCGSCWAFSAVASIEA
VNKIVTGNLISLSEQELVDCDTSDNQGCQGGLMDDAFKFVIQNGGIDTEEDYPYKAKDGK
CDQARKNARVVTIDGYEDVPDNDEKALKKAVAGQPVSVAIEAGGKDFQHYKSGIFTGKCG
AAVDHGVVAVGYGSENGMDYWIVRNSWGASWGEKGYLRMQRNIGNPKGLCGIATIASYPV
KTGQNPPKPAPSPPPVKPPTQCDDYNECPAGTTCCCVYEYYKYCFAWGCCPMEGATCCKD
HNSCCPHDYPVCNVKAGTCSISKNNPLGVKAMQHILAKPIGTFGNEGKKSPSS

Transcript Sequence

Gene sequence data has not been registered.